QTLs names with their functions responsible for different traits in Cajanus cajan
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| S.No. |
Genotype name |
Trait |
QTLs |
Function |
Reference |
| 1 |
ICP 5529 × ICP 11605 |
Days of flowering |
qDF3.1 |
Coding for pentatricopeptide repeat (PPR) containing protein PPR protein regulates flowering time in Arabidopsis. |
https://doi.org/10.1038/s41437-021-00486-x |
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qDF3.3 |
Codes for the cell division protein FtsZ homolog |
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qDF3.4 |
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qDF3.2 |
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| 2 |
Cajanus acutifolius × Cajanus cajanifolius |
Days to 50% flowering |
S7_14185076 |
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https://doi.org/10.1007/s00122-019-03504-z |
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S7_14276210 |
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S7_14775218 |
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S7_17744567 |
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| 3 |
Pusa Dwarf |
Days to flowering |
qFL4.1 |
Genetic mapping of these traits has direct implications for the development of short duration high yielding pigeonpea varieties. |
https://doi.org/10.1186/1471-2156-13-84 |
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qFL5.1 |
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| 4 |
ICP 99010 × ICP 5529 |
Cleistogamous flower |
qCl3.2 |
DNAJ heat shock N-terminal domain-containing protein; IPR001623 (DnaJ domain), IPR012336(Thioredoxin-like fold) |
https://doi.org/10.1186/s12864-019-5595-3 |
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qCl6.1 |
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| 5 |
Cajanus acutifolius × Cajanus cajanifolius |
Days to 50% maturity |
S7_14185076 |
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https://doi.org/10.1007/s00122-019-03504-z |
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S9_46575 |
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S11_24158029 |
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| 6 |
Pusa Dwarf |
Days to maturity |
qMT4.1 |
Genetic mapping of these traits has direct implications for the development of short duration high yielding pigeonpea varieties. |
https://doi.org/10.1186/1471-2156-13-84 |
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qMT5.1 |
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| 7 |
Pusa Dwarf |
Number of primary branches per plant |
qPB3.1 |
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https://doi.org/10.1038/s41598-020-61889-0 |
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qPB5.1 |
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| 8 |
Pusa Dwarf |
Pumber of primary branches per plant |
qPB4.1 |
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https://doi.org/10.1186/1471-2156-13-84 |
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qPB5.1 |
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| 9 |
Pusa Dwarf |
Pod bearing length on the primary branches |
qPBLp2.1 |
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https://doi.org/10.1038/s41598-020-61889-0 |
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| 10 |
Pusa Dwarf |
Secondary branches per plant |
qSB5.1 |
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https://doi.org/10.1186/1471-2156-13-84 |
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Number of seeds per pod |
qSP5.1 |
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qSP10.1 |
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| 11 |
H2001–4 |
Pod bearing length on the main axis |
qPBLm3.1 |
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https://doi.org/10.1038/s41598-020-61889-0 |
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Pod bearing length on the primary branches |
qPBLp7.1 |
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qPBLp7.2 |
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qPBLp7.3 |
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Number of seeds per pod |
qSP3.1 |
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| 12 |
Pusa Dwarf |
Number of pods per plant |
qPD3.1 |
Showed significant additive by additive, additive by dominance and dominance by dominance interactions |
https://doi.org/10.1186/1471-2156-13-84 |
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qPD5.1 |
Contributed to 6.79% of the total phenotypic variance as indicated by the heritability estimate of the epistatic allele by QTL Network |
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| 13 |
ICP 99010 × ICP 5529 |
Shriveled seed |
qShS6.1 |
Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Oryza sativa subsp. japonica RepID=Q2QW17_ORYSJ; IPR012337 (Ribonuclease H-like domain); GO:0003676 (nucleic acid binding) |
https://doi.org/10.1186/s12864-019-5595-3 |
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Seed size |
qSS6.1 |
UDP-glucose 6-dehydrogenase family protein; IPR017476 (UDP-glucose/GDP-mannose dehydrogenase); GO:0003979 (UDP-glucose 6-dehydrogenase activity), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process) |
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| 14 |
ICPL 20340×ICP 15739 |
Seed length |
QTL1 |
An indicator of reduced membrane integrity. |
https://doi.org/10.1007/s13205-020-02423-x |
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QTL2 |
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Seed width |
QTL3 |
An indicator of reduced membrane integrity. |
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QTL4 |
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QTL5 |
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Seed thickness |
QTL6 |
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QTL7 |
An indicator of reduced membrane integrity. |
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QTL8 |
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Seed weight |
QTL9 |
An indicator of reduced membrane integrity. |
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QTL10 |
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| 15 |
Pusa Dwarf |
Plant height |
qPH4.1 |
Showed positive additive effect indicating that the allele for increasing plant height |
https://doi.org/10.1186/1471-2156-13-84 |
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qPH5.1 |
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| 16 |
ICPA 2039 × ICPL 87119 |
Restoration of fertility |
qRf8.1 |
Genomics-assisted breeding and identification of causal genes/nucleotides for the restoration of fertility in the hybrid breeding program of pigeonpea. |
https://doi.org/10.1186/s12864-020-06859-6 |
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| 17 |
ICPL 20340×ICP 15739 |
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https://doi.org/10.1007/s13205-020-02423-x |
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Electrical conductivity |
QTL11 |
An indicator of reduced membrane integrity. |
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Water uptake |
QTL12 |
An indicator of reduced membrane integrity. |
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QTL13 |
An indicator of reduced membrane integrity. |
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QTL14 |
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QTL15 |
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| 18 |
ICPB 2049 × ICPL 99050 |
Fusarium wilt |
qFW1.1 |
FW resistance in susceptible cultivars |
https://doi.org/10.1038/s41598-017-01537-2 |
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qFW2.1 |
FW resistance in susceptible cultivars |
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qFW3.1 |
FW resistance in susceptible cultivars |
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qFW4.1 |
FW resistance in susceptible cultivars |
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qFW6.1 |
FW resistance in susceptible cultivars |
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qFW11.1 |
FW resistance in susceptible cultivars |
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qFW11.2 |
FW resistance in susceptible cultivars |
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qFW11.3 |
FW resistance in susceptible cultivars |
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| 19 |
ICPL 20096 × ICPL 332 |
Fusarium wilt |
qFW3.2 |
FW resistance in susceptible cultivars |
https://doi.org/10.1038/s41598-017-01537-2 |
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qFW7.1 |
FW resistance in susceptible cultivars |
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qFW11.1 |
FW resistance in susceptible cultivars |
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qFW11.2 |
FW resistance in susceptible cultivars |
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qFW11.3 |
FW resistance in susceptible cultivars |
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qFW11.4 |
FW resistance in susceptible cultivars |
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| 20 |
ICPL 85063 × ICPL 87119 |
Fusarium wilt |
qFW5.1 |
FW resistance in susceptible cultivars |
https://doi.org/10.1038/s41598-017-01537-2 |
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qFW8.1 |
FW resistance in susceptible cultivars |
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qFW8.2 |
FW resistance in susceptible cultivars |
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qFW11.1 |
FW resistance in susceptible cultivars |
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qFW11.3 |
FW resistance in susceptible cultivars |
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| 21 |
ICPL 20096 × ICPL 332 |
Sterility mosaic diseases |
qSMD11.1 |
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doi: 10.1038/s41598-017-01535-4 |
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| 22 |
ICPL 20097 × ICP 8863 |
Sterility mosaic diseases |
qSMD2.1 |
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doi: 10.1038/s41598-017-01535-4 |
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qSMD10.1 |
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| 23 |
ICP 8863 × ICPL 87119 |
Sterility mosaic diseases |
qSMD3.1 |
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doi: 10.1038/s41598-017-01535-4 |
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qSMD7.1 |
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qSMD11.2 |
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qSMD11.3 |
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qSMD11.4 |
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