Gene responsible for different traits in Cajanus cajan
|
| S.No. |
Genotype name |
Trait |
Chromosome |
Gene |
Function |
Reference |
| 1 |
ICP 5529 × ICP 11605 |
Days of flowering |
CcLG03 |
C.cajan_09900 |
Coding for pentatricopeptide repeat (PPR) containing protein PPR protein regulates flowering time in Arabidopsis. |
https://doi.org/10.1038/s41437-021-00486-x |
| |
|
|
|
C.cajan_10078 |
Codes for the cell division protein FtsZ homolog |
|
| 2 |
Pusa Dwarf |
Days to flowering |
LG_Cc4 |
|
|
https://doi.org/10.1186/1471-2156-13-84 |
| |
|
|
LG_Cc5 |
|
|
|
| 3 |
CcGEA |
Flower related gene |
CcLG06 |
C.cajan_11513 |
Pollen-specific protein SF3 |
doi: 10.1093/jxb/erx010. |
| |
|
|
CcLG07 |
C.cajan_18757 |
Probable serine/threonine-protein kinase At1g54610 |
|
| 4 |
ICPA 2043 |
Floral bud development |
|
C.cajan_44741 |
Probable pectate lyase 3 |
https://doi.org/10.1007/s10142-021-00775-y |
| |
|
|
|
C.cajan_10140 |
Pectinesterase inhibitors |
|
| |
|
|
|
C.cajan_04310 |
Pectinesterase inhibitors |
|
| |
|
|
|
C.cajan_46391 |
Pectinesterase inhibitors |
|
| |
|
|
|
C.cajan_19226 |
L-ascorbate oxidase homolog |
|
| |
|
|
|
|
|
|
| 5 |
ICP 99010 × ICP 5529 |
Cleistogamous flower |
CcLG03 |
C.cajan_08707 |
DNAJ heat shock N-terminal domain-containing protein; IPR001623 (DnaJ domain), IPR012336(Thioredoxin-like fold) |
https://doi.org/10.1186/s12864-019-5595-3 |
| |
|
|
CcLG06 |
|
|
|
| 6 |
Pusa Dwarf |
Days to maturity |
LG_Cc4 |
|
|
https://doi.org/10.1186/1471-2156-13-84 |
| |
|
|
LG_Cc5 |
|
|
|
| 7 |
Breeding lines, landraces and wild species |
Shoot length |
|
C.cajan_30211 |
U-box domain-containing protein 52 |
https://doi.org/10.1111/pbi.13422 |
| |
|
Root length |
|
C.cajan_29830 |
Universal stress protein A-like protein |
|
| |
|
Plant weight |
|
C.cajan_23080 |
Universal stress protein |
|
| 8 |
Pusa Dwarf |
Plant height |
LG_Cc4 |
|
Showed positive additive effect indicating that the allele for increasing plant height |
https://doi.org/10.1186/1471-2156-13-84 |
| |
|
|
|
|
|
|
| 9 |
C. acutifolius × C. cajanifolius |
Plant height |
LG_Cc11 |
|
|
|
| 10 |
Breeding lines, landraces and wild species |
Fresh weight |
|
C.cajan_26230 |
U-box domain-containing protein 35 |
https://doi.org/10.1111/pbi.13422 |
| |
|
|
|
C.cajan_46779 |
Cation/H(+) antiporter 15 |
|
| |
|
Dry weight |
|
C.cajan_26230 |
U-box domain-containing protein 35 |
|
| |
|
Turgid weight |
|
C.cajan_46779 |
Cation/H(+) antiporter 15 |
|
| |
|
Relative water content |
|
C.cajan_26230 |
U-box domain-containing protein 35 |
|
| 11 |
Pusa Dwarf |
Pumber of primary branches per plant |
LG_Cc4 |
|
|
https://doi.org/10.1186/1471-2156-13-84 |
| |
|
|
LG_Cc5 |
|
|
|
| |
|
Secondary branches per plant |
LG_Cc5 |
|
|
|
| |
|
Number of pods per plant |
LG_Cc4 |
|
|
|
| 12 |
ICP 99010 × ICP 5529 |
Shriveled seed |
CcLG06 |
C.cajan_11346 |
Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Oryza sativa subsp. japonica RepID=Q2QW17_ORYSJ; IPR012337 (Ribonuclease H-like domain); GO:0003676 (nucleic acid binding) |
https://doi.org/10.1186/s12864-019-5595-3 |
| |
|
|
|
C.cajan_11348 |
BTB/POZ domain-containing protein [Glycine max]; IPR027356(NPH3 domain) |
|
| |
|
|
|
C.cajan_11349 |
Hypothetical protein |
|
| |
|
|
|
C.cajan_11350 |
Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Oryza sativa subsp. japonica RepID=Q2RAY7_ORYSJ |
|
| |
|
|
|
C.cajan_11502 |
DNA methyltransferase 1-associated protein; IPR027109 (SWR1-complex protein 4/DNA methyltransferase 1-associated protein 1); GO:0006281 (DNA repair), GO:0006338 (chromatin remodeling), GO:0035267 (NuA4 histone acetyltransferase complex), GO:0043967 (histone H4 acetylation), GO:0043968 (histone H2A acetylation) |
https://doi.org/10.1186/s12864-019-5595-3 |
| |
|
|
|
C.cajan_11503 |
Pathogenesis-related thaumatin superfamily protein; IPR001938(Thaumatin) |
|
| |
|
|
|
C.cajan_11595 |
Peroxisomal 3-ketoacyl-CoA thiolase 3; IPR002155(Thiolase), IPR016039 (Thiolase-like); GO:0003824 (catalytic activity), GO:0008152(metabolic process) |
|
| |
|
|
CcLG09 |
C.cajan_22126 |
UDP-Glycosyltransferase superfamily protein; IPR002213(UDP-glucuronosyl/UDP-glucosyltransferase); GO:0008152(metabolic process) |
|
| |
|
|
|
C.cajan_22127 |
Protein n=1 Tax=Oryza sativa subsp. japonica RepID=C7IYR7_ORYSJ |
|
| |
|
|
|
C.cajan_22128 |
Glycogen/starch/alpha-glucan phosphorylase family protein; IPR000811(Glycosyl transferase, family 35); GO:0004645 (phosphorylase activity), GO:0005975 (carbohydrate metabolic process), GO:0008184(glycogen phosphorylase activity), GO:0030170 (pyridoxal phosphate binding) |
|
| |
|
|
|
C.cajan_22129 |
UDP-glucose 6-dehydrogenase family protein; IPR017476 (UDP-glucose/GDP-mannose dehydrogenase); GO:0003979 (UDP-glucose 6-dehydrogenase activity), GO:0051287 (NAD binding), GO:0055114 (oxidation-reduction process) |
https://doi.org/10.1186/s12864-019-5595-3 |
| |
|
Seed size |
CcLG06 |
|
|
|
| 13 |
C. acutifolius × C. cajanifolius |
100 seed weight |
CcLG10 |
|
|
https://doi.org/10.1007/s00122-019-03504-z |
| |
C. acutifolius × C. cajanifolius |
Number of seeds per pod |
CcLG11 |
|
|
https://doi.org/10.1007/s00122-019-03504-z |
| 14 |
ICP 5529 × ICP 11605 |
Shape of leaf |
CcLG08 |
C.cajan_15991 |
Coding for Ac-like transposase has been play an important role in wrinkled shape character in pea. |
https://doi.org/10.1038/s41437-021-00486-x |
| |
|
|
|
C.cajan_16002 |
Codes for F-box protein. The role of F-box protein has been identified in leaf size and shape. |
|
| |
|
|
|
C.cajan_16012 |
Uncharacterized protein |
|
| |
|
|
|
C.cajan_16013 |
Uncharacterized protein |
|
| 15 |
AKCMS 11 |
Pollen development |
|
|
|
https://doi.org/10.1186/s12870-020-2284-y |
| |
|
Up-regulated |
|
C.cajan_38216 |
GPI-anchored-like proteins |
|
| |
|
|
|
C.cajan_1528 |
Cytochrome P450-like 78A5 |
|
| |
|
|
|
C.cajan_88538 |
Cytochrome P450-like 71B34 |
|
| |
|
|
|
C.cajan_16351 |
Cytochrome P450 90A1-like |
|
| |
|
|
|
C.cajan_55694 |
Cytochrome P450 705A25-like |
|
| |
|
|
|
C.cajan_24040 |
Aspartic protease |
|
| |
|
|
|
C.cajan_37598 |
Ethylene-responsive transcription factor 5 (ERF5) |
|
| |
|
|
|
C.cajan_37057 |
GATA transcription factor 25-like |
|
| |
|
|
|
C.cajan_35517 |
Mitotic spindle assembly checkpoint protein (MAD1) |
|
| |
|
|
|
C.cajan_36686 |
WRKY transcription factor 33 (WRKY33) |
|
| |
|
Down-regulated |
|
C.cajan_41968 |
Auxin-responsive factor 72 (ARF72) |
|
| |
|
|
|
C.cajan_10186 |
Leucine-rich repeat receptor protein kinase EMS1 |
|
| |
|
|
|
C.cajan_37653 |
Fasciclin-like arabinogalactan protein 11 |
|
| |
|
|
|
C.cajan_38216 |
GPI-anchored-like proteins |
|
| |
|
|
|
C.cajan_34303 |
PHD finger like transcription factor (MS1) |
|
| |
|
|
|
C.cajan_44775 |
Callose synthase 7 |
|
| |
|
|
|
C.cajan_52234 |
Callose synthase 8 |
|
| |
|
|
|
C.cajan_83966 |
Polygalacturonase (PG) |
|
| |
|
|
|
C.cajan_61890 |
Endo-1,3-beta glucosidase 17 |
|
| |
|
|
|
C.cajan_7875 |
Endo-1,3-beta-glucosidase 14 |
|
| |
|
|
|
C.cajan_2910 |
Calmodulin-like protein 7 |
|
| |
|
|
|
C.cajan_47280 |
Calmodulin-binding receptor-like protein 2 |
|
| |
|
|
|
C.cajan_41720 |
Glycerol-3-phosphate acyltransferase 6 (GPAT6) |
|
| |
|
|
|
C.cajan_84874 |
Glycerol-3-phosphate acyltransferase 1 (GPAT1) |
|
| |
|
|
|
C.cajan_13394 |
fatty acid reductase 3 (FAR3) |
|
| |
|
|
|
C.cajan_697 |
S-locus lectin protein kinase family protein |
|
| |
|
|
|
C.cajan_52697 |
Late embryogenesis abundant protein 6 |
|
| |
|
|
|
C.cajan_51888 |
Mitotic spindle assembly checkpoint protein (MAD1) |
|
| |
|
|
|
C.cajan_41460 |
Cell division cycle protein 20.1 |
|
| |
|
|
|
C.cajan_41720 |
Glycerol-3-phosphate 2-O-acyltransferase 6 |
|
| |
|
|
|
C.cajan_47215 |
Basic helix-loop-helix (bHLH) DNA-binding protein |
|
| |
|
|
|
C.cajan_68741 |
Transcription factor bHLH90 |
|
| |
|
|
|
C.cajan_45806 |
P-loop containing nucleoside triphosphate hydrolases |
|
| |
|
|
|
C.cajan_697 |
S-locus lectin protein kinase family protein |
|
| |
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|
| 13 |
BDN 711 × ICPL 20096 |
Fusarium wilt |
CcLG11 |
C.cajan_03691 |
Encode “Pumilio homolog 6, (APUM-6)”. The PUF RNA-binding proteins are known to be conserved family in all eukaryotes. These PUF proteins show variability in their repeat number, position and amino acid sequence. |
https://doi.org/10.1007/s00122-020-03702-0 |
| |
|
|
CcLG07 |
C.cajan_18888 |
Codes for “Allene oxide cyclase” protein |
|
| 14 |
ICPB 2049 × ICPL 99050 |
Fusarium wilt |
CcLG01 |
|
FW resistance in susceptible cultivars |
https://doi.org/10.1038/s41598-017-01537-2 |
| |
|
|
CcLG02 |
|
FW resistance in susceptible cultivars |
|
| |
|
|
CcLG03 |
|
FW resistance in susceptible cultivars |
|
| |
|
|
CcLG04 |
|
FW resistance in susceptible cultivars |
|
| |
|
|
CcLG06 |
|
FW resistance in susceptible cultivars |
|
| |
|
|
CcLG11 |
|
FW resistance in susceptible cultivars |
|
| 15 |
ICPL 20096 × ICPL 332 |
Fusarium wilt |
CcLG03 |
|
FW resistance in susceptible cultivars |
https://doi.org/10.1038/s41598-017-01537-2 |
| |
|
|
CcLG07 |
|
FW resistance in susceptible cultivars |
|
| |
|
|
CcLG11 |
|
FW resistance in susceptible cultivars |
|
| |
|
|
CcLG11 |
|
FW resistance in susceptible cultivars |
|
| |
|
|
CcLG11 |
|
FW resistance in susceptible cultivars |
|
| |
|
|
CcLG11 |
|
FW resistance in susceptible cultivars |
|
| 16 |
ICPL 85063 × ICPL 87119 |
Fusarium wilt |
CcLG05 |
|
FW resistance in susceptible cultivars |
https://doi.org/10.1038/s41598-017-01537-2 |
| |
|
|
CcLG08 |
|
FW resistance in susceptible cultivars |
|
| |
|
|
CcLG08 |
|
FW resistance in susceptible cultivars |
|
| |
|
|
CcLG011 |
|
FW resistance in susceptible cultivars |
|
| |
|
|
CcLG011 |
|
FW resistance in susceptible cultivars |
|
| 17 |
BDN 711 × ICPL 20096 |
Sterility mosaic diseases |
CcLG02 |
C.cajan_07858 |
Code for “ABC transporter G family” |
https://doi.org/10.1007/s00122-020-03702-0 |
| |
|
|
CcLG04 |
C.cajan_20995 |
Translating “Myb protein 1 (DdTom1)”. Myb proteins are known to function as transcription factors with their ability to bind DNA. |
|
| |
|
|
CcLG04 |
C.cajan_21801 |
Code for “Myb-related protein” |
|
| 18 |
ICPL 20096 × ICPL 332 |
Sterility mosaic diseases |
CcLG11 |
|
|
doi: 10.1038/s41598-017-01535-4 |
| 19 |
ICPL 20097 × ICP 8863 |
Sterility mosaic diseases |
CcLG02 |
|
|
doi: 10.1038/s41598-017-01535-4 |
| |
|
|
CcLG10 |
|
|
|
| 20 |
ICP 8863 × ICPL 87119 |
Sterility mosaic diseases |
CcLG03 |
|
|
doi: 10.1038/s41598-017-01535-4 |
| |
|
|
CcLG07 |
|
|
|
| |
|
|
CcLG11 |
|
|
|
